Healthy Greek Yogurt Pumpkin Muffins (Moist, Spiced & Wholesome)

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By Gianna Poulef

Healthy Greek Yogurt Pumpkin Muffins

Thank you for being here — truly. These Healthy Greek Yogurt Pumpkin Muffins are one of those recipes that feel good from the very first bite. They’re moist without being heavy, gently sweet without overdoing it, and filled with warm spices that make the whole kitchen smell like autumn.

Pumpkin purée gives them that soft, tender crumb, while Greek yogurt adds moisture and a subtle tang that balances the sweetness beautifully. I love baking a batch on Sunday and enjoying them all week long. If cozy, nourishing baking is your thing, don’t forget to subscribe by email so you never miss a recipe from my kitchen to yours

Overview of Recipe Content

What Are Healthy Greek Yogurt Pumpkin Muffins?

These muffins are made with whole wheat flour, pumpkin purée, Greek yogurt, and natural sweeteners like maple syrup or honey. They’re lighter than traditional muffins but still incredibly satisfying.

Why You’ll Love This Recipe

  • Naturally sweetened
  • Soft and moist texture
  • Packed with warm fall spices
  • Perfect for breakfast or snacks

What Do They Taste Like?

Warm cinnamon and nutmeg, mellow pumpkin flavor, and a tender crumb that stays moist for days — comforting and familiar.

Ingredients

This Now, Make It Later!

For the Pumpkin Muffins

  • 1 cup pumpkin purée (canned, not pumpkin pie filling)
  • 1 large egg, room temperature
  • ⅔ cup maple syrup or honey
  • ¼ cup vegetable oil
  • ¼ cup plain or vanilla Greek yogurt (2%)
  • 2 teaspoons vanilla extract
  • 1½ teaspoons baking powder
  • ½ teaspoon baking soda
  • 1 teaspoon ground cinnamon
  • ¼ teaspoon ground nutmeg
  • ½ teaspoon salt
  • 1⅔ cups whole wheat flour

Optional Add-Ins

  • ½ cup chocolate chips
  • ½ cup chopped walnuts or pecans
  • ¼ teaspoon ground cloves
  • Pumpkin seeds for topping

Tools Needed

Substitutions & Additions

  • Use all-purpose flour if preferred
  • Swap oil for melted coconut oil
  • Use dairy-free yogurt if needed
  • Replace honey with maple syrup for vegan option

How to Make Healthy Greek Yogurt Pumpkin Muffins

Step 1: Prep

Preheat oven to 350°F (175°C). Line or grease a muffin tin.

Step 2: Mix Wet Ingredients

In a large bowl, whisk pumpkin purée, egg, maple syrup (or honey), oil, Greek yogurt, and vanilla until smooth.

Step 3: Mix Dry Ingredients

In a separate bowl, whisk flour, baking powder, baking soda, cinnamon, nutmeg, and salt.

Step 4: Combine

Add dry ingredients to wet ingredients and gently stir until just combined.

Step 5: Fill Muffin Cups

Divide batter evenly among muffin cups, filling about ¾ full.

Step 6: Bake

Bake 18–22 minutes, until a toothpick inserted comes out clean.

Step 7: Cool

Cool 5 minutes in the pan, then transfer to a rack.

What to Serve with Pumpkin Muffins

  • Hot coffee or chai tea
  • Greek yogurt and fruit
  • Almond or peanut butter
  • A drizzle of honey

Tips for Making It Perfect

  • Use pure pumpkin purée
  • Don’t overmix the batter
  • Let muffins cool before storing
  • Measure flour accurately

Storage Instructions

  • Store at room temperature 2 days
  • Refrigerate up to 5 days
  • Freeze up to 2 months
  • Reheat gently before serving

General Information

Pumpkin baking is popular because pumpkin adds moisture, fiber, and natural sweetness. Greek yogurt helps create a tender crumb while boosting protein content.

Frequently Asked Questions

Are these muffins healthy?

Yes — made with whole grains, pumpkin, and natural sweeteners.

Can I make them dairy-free?

Yes, use dairy-free yogurt.

Are they freezer-friendly?

Absolutely — freeze and thaw as needed.

Can I use all-purpose flour?

Yes, same amount works well.

Conclusion

These Healthy Greek Yogurt Pumpkin Muffins are soft, nourishing, and full of cozy fall flavor — a recipe you’ll come back to every pumpkin season. If you loved these, try these next:

Interactive Elements

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Nutritional Information (Per Muffin – Approximate)

NutrientAmount
Calories180
Fat6g
Saturated Fat1g
Carbs28g
Sugar14g
Protein4g
Fiber3g
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Healthy Greek Yogurt Pumpkin Muffins (Moist, Spiced & Wholesome)


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  • Author: Gianna Poulef
  • Total Time: 30 minutes
  • Yield: 12 muffins 1x
  • Diet: Vegetarian

Description

Healthy Greek Yogurt Pumpkin Muffins are soft, moist, and warmly spiced muffins made with pumpkin purée, whole wheat flour, and naturally sweetened with maple syrup or honey.


Ingredients

Scale

1 cup pumpkin purée

1 large egg

⅔ cup maple syrup or honey

¼ cup vegetable oil

¼ cup Greek yogurt

2 teaspoons vanilla extract

1½ teaspoons baking powder

½ teaspoon baking soda

1 teaspoon ground cinnamon

¼ teaspoon ground nutmeg

½ teaspoon salt

1⅔ cups whole wheat flour


Instructions

1. Preheat oven to 350°F and prepare muffin tin.

2. Whisk pumpkin, egg, syrup, oil, yogurt, and vanilla.

3. Whisk dry ingredients separately.

4. Combine wet and dry ingredients gently.

5. Divide batter into muffin cups.

6. Bake 18–22 minutes.

7. Cool before serving.

Notes

Use pure pumpkin purée.

Do not overmix.

Great for meal prep.

  • Prep Time: 10 minutes
  • Cook Time: 20 minutes
  • Category: Breakfast
  • Method: Baking
  • Cuisine: American

Nutrition

  • Serving Size: 1 muffin
  • Calories: 180
  • Sugar: 14g
  • Sodium: 190mg
  • Fat: 6g
  • Saturated Fat: 1g
  • Unsaturated Fat: 4.5g
  • Trans Fat: 0g
  • Carbohydrates: 28g
  • Fiber: 3g
  • Protein: 4g
  • Cholesterol: 35mg
Healthy Greek Yogurt Pumpkin Muffins (Moist, Spiced & Wholesome)
Gianna Poulef
CEO, Chef & Recipe Creator at BLYNO LLC | Website

I’m Gianna Poulef from Poulef Recipes. I love sharing perfected dishes from my kitchen. I’m sure they’ll earn a spot in your heart. Let’s savor this journey together!.

Let’s be friends!

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