Moist Keto Carrot Cake Muffins with Sugar-Free Cream Cheese Center

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By Gianna Poulef

Keto Carrot Cake Muffins

These Keto Carrot Cake Muffins capture everything we love about carrot cake: tender crumb, warm spices, and that irresistible cream cheese moment—while staying low carb, gluten-free, and refined-sugar-free.

Overview of Keto Carrot Cake Muffins

These muffins are perfect for:

  • Low carb breakfasts
  • Keto-friendly snacks
  • Meal prep treats
  • Guilt-free dessert cravings

Why you’ll love this recipe

  • Low carb & keto-friendly
  • Naturally gluten-free
  • Moist and tender (never dry!)
  • Creamy sugar-free cream cheese center

What they taste like

Warm cinnamon and nutmeg, lightly sweet carrot cake crumb, and a smooth, tangy cream cheese center that melts into every bite.

Full Ingredient List

This Now, Make It Later!

For the Muffin Batter

  • 2 cups almond flour (blanched, finely ground)
  • 1/3 cup keto-friendly sweetener (erythritol or monk fruit blend)
  • 1 teaspoon baking powder
  • 1/2 teaspoon baking soda
  • 1 1/2 teaspoons ground cinnamon
  • 1/4 teaspoon ground nutmeg
  • 1/4 teaspoon salt
  • 3 large eggs, room temperature
  • 1/3 cup melted butter or coconut oil
  • 1/4 cup unsweetened almond milk
  • 1 teaspoon vanilla extract
  • 1 cup finely grated carrots (packed)
  • 1/4 cup chopped pecans or walnuts (optional)

For the Sugar-Free Cream Cheese Center

  • 6 oz cream cheese, softened
  • 2 tablespoons powdered keto sweetener
  • 1/2 teaspoon vanilla extract

Tools You’ll Need

  • Mixing bowls
  • Whisk and spatula
  • Muffin pan
  • Muffin liners
  • Measuring cups and spoons

Substitutions & Additions

  • Swap butter for coconut oil for dairy-free muffins
  • Add shredded coconut for texture
  • Use pumpkin spice instead of cinnamon/nutmeg
  • Top with chopped nuts for crunch

How to Make Keto Carrot Cake Muffins

Step 1: Preheat and Prepare

Preheat oven to 350°F (180°C). Line a muffin pan with liners.

Step 2: Make the Cream Cheese Filling

In a small bowl, mix cream cheese, powdered sweetener, and vanilla until smooth. Set aside.

Step 3: Mix Dry Ingredients

In a large bowl, whisk almond flour, sweetener, baking powder, baking soda, cinnamon, nutmeg, and salt.

Step 4: Mix Wet Ingredients

In another bowl, whisk eggs, melted butter, almond milk, and vanilla.

Step 5: Combine and Fold

Add wet ingredients to dry and mix gently. Fold in grated carrots and nuts.

Step 6: Assemble Muffins

Fill each liner halfway with batter. Add 1 tablespoon cream cheese mixture to the center, then top with more batter.

Step 7: Bake

Bake for 22–26 minutes, until tops are set and lightly golden.

Step 8: Cool

Let muffins cool for 10 minutes before serving. The centers set beautifully as they cool.

What to Serve with Keto Carrot Cake Muffins

  • Bulletproof coffee or espresso
  • Unsweetened almond milk
  • Greek-style keto yogurt
  • Fresh berries (in moderation)

Tips for Making Them Perfect

  • Finely grate carrots for best texture
  • Don’t overfill liners
  • Let muffins cool so cream cheese sets
  • Store chilled for best consistency

Storage Instructions

  • Refrigerator: Store in airtight container up to 5 days
  • Freezer: Freeze up to 2 months
  • Reheat: 10–15 seconds in microwave if desired

General Information

Carrot cake is naturally suited for keto baking thanks to almond flour and warm spices. With controlled carrot amounts and sugar-free sweeteners, you get all the flavor without the carbs.

Frequently Asked Questions

Are these muffins truly keto?
Yes—low net carbs and keto-approved ingredients.

Do they taste eggy?
Not at all. Spices and carrots balance everything.

Can I skip the cream cheese center?
Yes, but it’s highly recommended!

Can I make mini muffins?
Absolutely—reduce bake time to 12–15 minutes.

Conclusion

These Keto Carrot Cake Muffins are proof that low carb baking can still feel indulgent, cozy, and deeply satisfying. If you love recipes like this, you’ll also enjoy:

Interactive Elements

If you bake these muffins, leave a review below!
Share your muffins on Pinterest and tag me here:
https://www.pinterest.com/poulefrecipe/

Nutritional Information (Approximate Per Muffin)

CaloriesFatSaturated FatCarbsNet CarbsProtein
21018g7g7g3g7g
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Moist Keto Carrot Cake Muffins with Sugar-Free Cream Cheese Center


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  • Author: Gianna Poulef
  • Total Time: PT40M
  • Yield: 12 muffins 1x

Description

Moist keto carrot cake muffins with warm spices and a sugar-free cream cheese center. Low carb, gluten-free, and deeply satisfying.


Ingredients

Scale

2 cups almond flour

1/3 cup keto sweetener

1 teaspoon baking powder

1/2 teaspoon baking soda

1 1/2 teaspoons ground cinnamon

1/4 teaspoon ground nutmeg

1/4 teaspoon salt

3 large eggs

1/3 cup melted butter or coconut oil

1/4 cup unsweetened almond milk

1 teaspoon vanilla extract

1 cup finely grated carrots

6 oz cream cheese

2 tablespoons powdered keto sweetener

1/2 teaspoon vanilla extract


Instructions

1. Preheat oven to 350°F and line muffin pan.

2. Mix cream cheese, powdered sweetener, and vanilla until smooth.

3. Whisk dry muffin ingredients.

4. Whisk wet ingredients separately.

5. Combine wet and dry ingredients.

6. Fold in grated carrots.

7. Fill liners halfway, add cream cheese center, top with batter.

8. Bake 22–26 minutes until set.

9. Cool before serving.

Notes

– Finely grate carrots for best texture.

– Let muffins cool so filling sets.

– Store refrigerated.

  • Prep Time: PT15M
  • Cook Time: PT25M
  • Category: Breakfast
  • Method: Baking
  • Cuisine: American

Nutrition

  • Serving Size: 1 muffin
  • Calories: 210
  • Sugar: 1g
  • Sodium: 180mg
  • Fat: 18g
  • Saturated Fat: 7g
  • Unsaturated Fat: 9g
  • Trans Fat: 0g
  • Carbohydrates: 7g
  • Fiber: 4g
  • Protein: 7g
  • Cholesterol: 85mg
Moist Keto Carrot Cake Muffins with Sugar-Free Cream Cheese Center
Gianna Poulef
CEO, Chef & Recipe Creator at BLYNO LLC | Website

I’m Gianna Poulef from Poulef Recipes. I love sharing perfected dishes from my kitchen. I’m sure they’ll earn a spot in your heart. Let’s savor this journey together!.

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