Healthy Cinnamon Apple Peanut Butter Muffins with Greek Yogurt

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By Gianna Poulef

There’s something so cozy and nostalgic about the smell of cinnamon and apples wafting through the kitchen, don’t you think? Today, I’m beyond excited to share these Healthy Cinnamon Apple Peanut Butter Muffins with Greek Yogurt—a wholesome, protein-packed treat that’s perfect for busy mornings, afternoon snacks, or even a guilt-free dessert.

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Overview of Recipe Content

These muffins are everything you want in a healthy baked good: moist, flavorful, and nourishing. They balance sweet apple chunks, creamy peanut butter, and warm cinnamon spice—all tied together with the tangy richness of Greek yogurt.

  • When to enjoy them: Perfect for breakfast meal prep, post-workout snacks, or packing into lunchboxes.
  • Why you’ll love them: No refined sugar, flourless (oat-based!), full of protein and fiber, and naturally sweetened with honey or maple syrup.
  • Taste profile: Warm cinnamon spice with juicy apple bursts, balanced by nutty peanut butter richness.
  • Nutritional perk: Greek yogurt + peanut butter = extra protein. Oat flour = fiber-packed and gluten-free (if you use certified GF oats).

Ingredients You’ll Need

  • ½ cup Greek yogurt
  • ½ cup peanut butter (creamy, unsweetened works best)
  • ¼ cup honey or maple syrup
  • 1 egg
  • 1 teaspoon vanilla extract
  • 1 cup oat flour
  • ½ teaspoon baking powder
  • 1 teaspoon cinnamon
  • ½ cup apple chunks (small pieces, skin on for extra fiber!)

Tools You’ll Need

  • Mixing bowls
  • Whisk & spatula
  • Muffin tin & liners
  • Measuring cups/spoons

Substitutions & Additions

  • Nut-free option: Swap peanut butter with sunflower seed butter.
  • Extra sweetness: Add 2–3 tbsp coconut sugar.
  • Add-ins: Toss in raisins, chopped walnuts, or even dark chocolate chips.

How to Make Healthy Cinnamon Apple Peanut Butter Muffins with Greek Yogurt

  1. Preheat & Prep: Heat oven to 350°F (175°C). Line a muffin tin with paper liners or lightly grease with oil spray.
  2. Mix Wet Ingredients: In a bowl, whisk together Greek yogurt, peanut butter, honey (or maple syrup), egg, and vanilla until smooth.
  3. Add Dry Ingredients: Gently fold in oat flour, baking powder, and cinnamon until just combined.
  4. Fold in Apples: Stir in the apple chunks. The batter will be thick and hearty.
  5. Fill Muffin Tins: Divide batter evenly between muffin cups (makes about 8–10 muffins).
  6. Bake: Bake for 18–22 minutes, until a toothpick inserted comes out clean.
  7. Cool & Enjoy: Let muffins cool before serving—though I won’t blame you if you sneak one warm out of the oven!

Pro tip: Spread a little extra peanut butter on top for an indulgent touch.

What to Serve with Healthy Cinnamon Apple Peanut Butter Muffins

Tips for Making It Perfect

  • Don’t overmix the batter—keeps the muffins fluffy.
  • Dice apples into small pieces so they bake evenly.
  • Use room-temperature Greek yogurt and peanut butter for smoother mixing.
  • For meal prep, double the batch and freeze half!

Storage Instructions

  • Room temp: Store in an airtight container for up to 3 days.
  • Fridge: Keeps for 1 week.
  • Freezer: Wrap muffins individually, freeze up to 3 months. Reheat in the microwave for 30 seconds.

General Information

This recipe is a little nod to my grandmother’s fall baking rituals—she always had a cinnamon-apple treat on the counter. By modernizing her approach with Greek yogurt and peanut butter, we get that same cozy flavor in a protein-packed, healthier muffin.

Frequently Asked Questions

Can I make these muffins vegan?
Yes! Swap the egg for a flax egg (1 tbsp ground flax + 3 tbsp water).

Can I use almond flour instead of oat flour?
Not directly—it changes the texture. Best to stick with oat flour.

Do I need muffin liners?
Not necessarily, but they make cleanup easier.

Can I make these into mini muffins?
Absolutely—just bake for 10–12 minutes instead.

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Conclusion

These Healthy Cinnamon Apple Peanut Butter Muffins with Greek Yogurt are proof that wholesome and indulgent can live in the same bite. Whether you’re meal-prepping for the week or just craving a cozy, cinnamon-kissed treat, these muffins will bring joy to your kitchen.

If you love baking with apples, check out my Healthy Apple Crisp or my Fluffy Apple Pancakes next!

Interactive Elements

I’d love to see your baking! Leave a comment below if you try these muffins, and don’t forget to share a photo on Pinterest or tag me on Instagram @poulefrecipe.

Nutritional Information (per muffin, approx.)

CaloriesProteinCarbsFiberFatSugar
1808g20g3g9g7g
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Healthy Cinnamon Apple Peanut Butter Muffins with Greek Yogurt


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  • Author: Poulef
  • Total Time: 30
  • Yield: 10 muffins 1x

Description

Wholesome, protein-packed muffins made with apples, peanut butter, Greek yogurt, and warm cinnamon spice. Perfect for breakfast or snacks!


Ingredients

Scale

½ cup Greek yogurt

½ cup peanut butter

¼ cup honey or maple syrup

1 egg

1 teaspoon vanilla extract

1 cup oat flour

½ teaspoon baking powder

1 teaspoon cinnamon

½ cup apple chunks


Instructions

1. Preheat oven to 350°F and prepare muffin tin.

2. Whisk together Greek yogurt, peanut butter, honey, egg, and vanilla.

3. Fold in oat flour, baking powder, and cinnamon.

4. Stir in diced apples.

5. Fill muffin cups and bake 18–22 minutes.

6. Cool before serving.

Notes

Store muffins in an airtight container for 3 days at room temp, 1 week in fridge, or freeze up to 3 months.

  • Prep Time: 10
  • Cook Time: 20
  • Category: Breakfast, Snack
  • Method: Baking
  • Cuisine: American

Nutrition

  • Serving Size: 1 muffin
  • Calories: 180
  • Sugar: 7
  • Sodium: 70
  • Fat: 9
  • Saturated Fat: 2
  • Unsaturated Fat: 6
  • Trans Fat: 0
  • Carbohydrates: 20
  • Fiber: 3
  • Protein: 8
  • Cholesterol: 20
Healthy Cinnamon Apple Peanut Butter Muffins with Greek Yogurt
Gianna Poulef
CEO, Chef & Recipe Creator at BLYNO LLC | Website

I’m Gianna Poulef from Poulef Recipes. I love sharing perfected dishes from my kitchen. I’m sure they’ll earn a spot in your heart. Let’s savor this journey together!.

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